Irmarie Cotto
Aguada
Summary
Environmental Engineer with extensive experience in performing big data analysis using open-source software and high-performance computing environments. Proficient in R and Linux/Unix, with a strong background in data processing, statistical analysis, and data visualization. Adept at managing large datasets and developing analytical workflows to derive meaningful insights. Demonstrated ability to collaborate effectively with interdisciplinary teams, work with diverse cultures, and resolve conflicts professionally. Seeking an internship opportunity to apply and expand my expertise in data analysis within a dynamic company.
Overview
13
13
years of professional experience
Work History
Postdoctoral Fellow
University of Washington
Seattle
01.2023 - Current
- Utilize open-source bioinformatic software and R for data processing, analysis, visualization, and automation of workflows
- Develop and implement bioinformatic methods to characterize resistome-related risks to human health
- Assist in the preparation of grant proposals
- Mentor and train students in bioinformatic and data analysis
- Deliver guest lectures on wastewater microbiomes and the environmental impact of antimicrobial resistance.
Postdoctoral Research Associate
Georgia Tech
Atlanta
09.2022 - 12.2022
- Designed and executed an in situ full-scale experiment to characterize ammonia removal kinetics in wastewater
- Processed and prepared wastewater samples for DNA and RNA sequencing
- Applied statistical methods and bioinformatics techniques to interpret metagenomic large-scale data
- Reviewed manuscripts for academic journals
Research Assistant
Northeastern University
Boston
09.2016 - 08.2022
- Coordinated extensive sampling campaigns in wastewater systems
- Developed qPCR assays for detecting nitrifying bacteria
- Conducted NGS by processing wastewater samples and extracting DNA
- Applied advanced bioinformatics workflows for sequencing data analysis
- Conducted statistical analyses to correlate the activity of nitrifying bacteria with wastewater process parameters
- Mentored and trained students in scientific methods and instrumentation
- Prepared manuscripts for publication in peer-reviewed journals and wrote research reports
- Delivered guest lectures on environmental engineering, environmental biological processes and environmental physical/chemical processes.
Laboratory Technician
University of Puerto Rico
Mayagüez
01.2016 - 06.2016
- Supervised and supported students in laboratory activities, ensuring proper use of laboratory facilities and adherence to safety protocols
- Operated and maintained laboratory instruments and equipment, ensuring optimal performance
- Troubleshot and repaired malfunctioning equipment or coordinated with external service providers for repairs
- Managed chemical inventory by tracking hazardous materials and ordering supplies as needed.
Laboratory Technician Assistant
University of Puerto Rico
Mayagüez
06.2012 - 12.2015
- Supported the scientific laboratory technician with laboratory tests to assist in scientific investigations
- Operated and maintained standard laboratory equipment, ensuring the lab was well-stocked and safe.
Research Assistant
University of Puerto Rico
Mayagüez
01.2012 - 12.2015
- Monitoring Phthalates and Chlorinated Volatile Organic Compounds in Groundwater and Tap Water
- Organized and conducted groundwater and tap water sampling campaigns, ensuring proper sample collection and preservation
- Developed technologies for detecting organic contaminants in groundwater and tap water
- Performed liquid-liquid extraction for the analysis of contaminants using Gas Chromatography instruments
- Delivered guest lectures on environmental chemistry.
Education
Ph.D. - Civil and Environmental Engineering
Northeastern University
Boston, MA08.2022
M.S. - Civil Engineering
University of Puerto Rico
Mayagüez, PR12.2015
B.S. - Chemical Engineering
University of Puerto Rico
Mayagüez, PR12.2011
Skills
- Communication: Written and verbal communication in Spanish and English
- Software/Programming Languages: Open-source software, R, Linux/Unix, high-performance computing environments, and MS Office
- Analytical: Experimental design, big data collection and analysis, analytical reasoning, statistical methods, data visualization, report writing
- Interpersonal: Strong communication, active listening, empathy, teamwork, and conflict resolution
Timeline
Postdoctoral Fellow
University of Washington
01.2023 - Current
Postdoctoral Research Associate
Georgia Tech
09.2022 - 12.2022
Research Assistant
Northeastern University
09.2016 - 08.2022
Laboratory Technician
University of Puerto Rico
01.2016 - 06.2016
Laboratory Technician Assistant
University of Puerto Rico
06.2012 - 12.2015
Research Assistant
University of Puerto Rico
01.2012 - 12.2015
Ph.D. - Civil and Environmental Engineering
Northeastern University
M.S. - Civil Engineering
University of Puerto Rico
B.S. - Chemical Engineering
University of Puerto Rico
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